Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NKX2-1 ENSBTAG00000000541

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Description

NK2 homeobox 1 [Source:VGNC Symbol;Acc:VGNC:49980]

Location

Primary_assembly 21: 46,701,290-46,706,031 reverse strand.

ARS-UCD1.3:CM008188.2

About this gene

This gene has 3 transcripts (splice variants), 204 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000084719.2	NKX2-1-203	2670	408aa	ENSBTAP00000068847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M5C3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000000704.6	NKX2-1-201	2846	370aa	ENSBTAP00000000704.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MS72	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000085299.2	NKX2-1-202	2513	400aa	ENSBTAP00000057642.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LRH0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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