Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PDGFB ENSBTAG00000021697

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Description

platelet derived growth factor subunit B [Source:VGNC Symbol;Acc:VGNC:32690]

Location

Primary_assembly 5: 110,665,525-110,687,675 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 4 transcripts (splice variants), 261 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000063564.2	PDGFB-203	2328	241aa	ENSBTAP00000056346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1H0W5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000120225.1	PDGFB-204	2512	221aa	ENSBTAP00000100276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TNY1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000091227.1	PDGFB-201	2508	235aa	ENSBTAP00000095898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TB02	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000028919.4	PDGFB-202	2386	231aa	ENSBTAP00000028919.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6QVT3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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