Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TNRC6A ENSBTAG00000017999

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Description

trinucleotide repeat containing adaptor 6A [Source:VGNC Symbol;Acc:VGNC:36204]

Location

Primary_assembly 25: 22,384,461-22,480,098 forward strand.

ARS-UCD2.0:CM008192.2

About this gene

This gene has 5 transcripts (splice variants), 204 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000064228.4	TNRC6A-202	7035	1948aa	ENSBTAP00000055965.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N258	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000076208.3	TNRC6A-203	6888	1899aa	ENSBTAP00000058757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LIC9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000023950.8	TNRC6A-204	6855	1888aa	ENSBTAP00000023950.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MX25	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000076904.3	TNRC6A-201	6784	1840aa	ENSBTAP00000067682.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N978	-
ENSBTAT00000087097.3	TNRC6A-205	6489	1766aa	ENSBTAP00000067169.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MAD1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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