Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTCH1 ENSBTAG00000009903

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Description

patched 1 [Source:VGNC Symbol;Acc:VGNC:106881]

Location

Primary_assembly 8: 82,099,900-82,168,693 reverse strand.

ARS-UCD2.0:CM008175.2

About this gene

This gene has 4 transcripts (splice variants), 215 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000108249.1	PTCH1-202	5617	1453aa	ENSBTAP00000079227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S7E1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000130372.1	PTCH1-201	5591	1427aa	ENSBTAP00000090335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T187	-
ENSBTAT00000064817.3	PTCH1-204	5474	1388aa	ENSBTAP00000055675.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N1D5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000013074.6	PTCH1-203	5461	1401aa	ENSBTAP00000013074.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MVV4	-

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Summary

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