Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SHROOM4 ENSBTAG00000002996

.

Description

shroom family member 4 [Source:VGNC Symbol;Acc:VGNC:34610]

Location

Primary_assembly X: 88,414,584-88,674,035 reverse strand.

ARS-UCD2.0:CM008197.2

About this gene

This gene has 6 transcripts (splice variants), 254 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000111341.1	SHROOM4-204	5838	1545aa	ENSBTAP00000098274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TII1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000109187.1	SHROOM4-201	5866	1521aa	ENSBTAP00000089148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SY27	-
ENSBTAT00000063694.4	SHROOM4-203	5833	1507aa	ENSBTAP00000055154.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N000	-
ENSBTAT00000088880.1	SHROOM4-202	5724	1507aa	ENSBTAP00000092004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T5K1	-
ENSBTAT00000125666.1	SHROOM4-205	5688	1495aa	ENSBTAP00000077012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RUT7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000091789.1	SHROOM4-206	4614	1471aa	ENSBTAP00000095230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TE97	-

.

Summary

.

.