Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LAMP2 ENSBTAG00000007399

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Description

lysosomal associated membrane protein 2 [Source:VGNC Symbol;Acc:VGNC:30776]

Location

Primary_assembly X: 4,988,067-5,023,750 reverse strand.

ARS-UCD2.0:CM008197.2

About this gene

This gene has 4 transcripts (splice variants), 200 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000049397.4	LAMP2-204	3395	494aa	ENSBTAP00000046293.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6RXB9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000065411.3	LAMP2-202	1894	494aa	ENSBTAP00000054262.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MXJ5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000084421.2	LAMP2-201	1528	453aa	ENSBTAP00000073713.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MTN6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000066443.2	LAMP2-203	1486	451aa	ENSBTAP00000067433.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N8P4	-

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Summary

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