Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CIC ENSBTAG00000019785

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Description

capicua transcriptional repressor [Source:VGNC Symbol;Acc:VGNC:27363]

Location

Primary_assembly 18: 50,982,136-51,009,598 reverse strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 4 transcripts (splice variants), 240 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000064364.3	CIC-201	8572	2509aa	ENSBTAP00000054105.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MX46	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000075541.2	CIC-203	8329	2508aa	ENSBTAP00000057470.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MSI7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000114722.1	CIC-204	7510	2322aa	ENSBTAP00000077723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RWC2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000026362.8	CIC-202	5803	1602aa	ENSBTAP00000026362.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B8E2	-

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Summary

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