Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HDAC5 ENSBTAG00000016254

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Description

histone deacetylase 5 [Source:VGNC Symbol;Acc:VGNC:50612]

Location

Primary_assembly 19: 43,913,857-43,951,107 reverse strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 4 transcripts (splice variants), 196 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000089183.1	HDAC5-201	3584	1165aa	ENSBTAP00000084340.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SG42	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000061581.4	HDAC5-204	3808	1104aa	ENSBTAP00000053450.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNA5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000109120.1	HDAC5-202	3523	1031aa	ENSBTAP00000076511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZI8	-
ENSBTAT00000038317.5	HDAC5-203	2956	788aa	ENSBTAP00000038132.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2T9N9	-

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Summary

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