Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX25 ENSBTAG00000010351

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Description

sorting nexin 25 [Source:VGNC Symbol;Acc:VGNC:35104]

Location

Primary_assembly 27: 15,529,645-15,621,603 forward strand.

ARS-UCD2.0:CM008194.2

About this gene

This gene has 5 transcripts (splice variants), 205 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000085525.2	SNX25-201	3966	1085aa	ENSBTAP00000074101.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MQ55	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000088765.1	SNX25-202	3825	1038aa	ENSBTAP00000102577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U0I0	-
ENSBTAT00000084227.2	SNX25-203	3525	938aa	ENSBTAP00000072634.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MEN5	-
ENSBTAT00000146508.1	SNX25-204	3393	870aa	ENSBTAP00000105482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000061394.4	SNX25-205	2942	789aa	ENSBTAP00000053444.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNB7	-

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Summary

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