Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: STX2 ENSBTAG00000007988

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Description

syntaxin 2 [Source:VGNC Symbol;Acc:VGNC:35438]

Location

Primary_assembly 17: 46,316,735-46,383,130 forward strand.

ARS-UCD2.0:CM008184.2

About this gene

This gene has 4 transcripts (splice variants), 253 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000061491.5	STX2-202	1127	317aa	ENSBTAP00000053418.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000080949.3	STX2-201	3149	303aa	ENSBTAP00000070236.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NEX5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000071217.3	STX2-204	1959	314aa	ENSBTAP00000071521.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MPD9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000090643.2	STX2-203	1016	280aa	ENSBTAP00000102225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TUD7	-

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Summary

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