Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
Regulation
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ID History
- Gene history

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Gene: HGD ENSBTAG00000015895

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Description

homogentisate 1,2-dioxygenase [Source:VGNC Symbol;Acc:VGNC:29833]

Location

Primary_assembly 1: 65,337,969-65,380,604 reverse strand.

ARS-UCD2.0:CM008168.2

About this gene

This gene has 3 transcripts (splice variants) and 203 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000079549.2	HGD-202	1935	512aa	ENSBTAP00000066622.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N7G4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000061425.3	HGD-203	1612	445aa	ENSBTAP00000053295.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8YB76	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000087453.2	HGD-201	1541	447aa	ENSBTAP00000057899.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LS65	-

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Summary

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