Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CCDC57 ENSBTAG00000019321

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Description

coiled-coil domain containing 57 [Source:VGNC Symbol;Acc:VGNC:26901]

Location

Primary_assembly 19: 50,662,473-50,773,016 forward strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 4 transcripts (splice variants), 137 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000089529.2	CCDC57-204	3508	1036aa	ENSBTAP00000076976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RUR1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000077443.3	CCDC57-201	3488	1024aa	ENSBTAP00000065449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N5I2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000061203.5	CCDC57-202	3305	981aa	ENSBTAP00000053289.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BM94	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000069534.3	CCDC57-203	3275	971aa	ENSBTAP00000072746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NKA9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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