Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: RNF180 ENSBTAG00000043992

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Description

ring finger protein 180 [Source:VGNC Symbol;Acc:VGNC:34038]

Location

Primary_assembly 20: 15,106,093-15,389,931 reverse strand.

ARS-UCD2.0:CM008187.2

About this gene

This gene has 4 transcripts (splice variants), 195 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000067049.2	RNF180-203	2156	659aa	ENSBTAP00000064984.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M467	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000066496.2	RNF180-201	2788	592aa	ENSBTAP00000069481.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MEM4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000078186.2	RNF180-204	2639	545aa	ENSBTAP00000061125.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LUT8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000061221.3	RNF180-202	2169	621aa	ENSBTAP00000053251.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BMC5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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