Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Gene: AJM1 ENSBTAG00000039708

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Description

apical junction component 1 homolog [Source:VGNC Symbol;Acc:VGNC:49537]

Location

Primary_assembly 11: 105,929,232-105,935,875 forward strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 5 transcripts (splice variants) and 229 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000120625.1	AJM1-203	4715	975aa	ENSBTAP00000102300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B9Y2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000134322.1	AJM1-204	4703	975aa	ENSBTAP00000091157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B9Y2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000090581.1	AJM1-205	4612	975aa	ENSBTAP00000079489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B9Y2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000090219.1	AJM1-201	3475	972aa	ENSBTAP00000098938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TKG5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000053888.4	AJM1-202	3442	975aa	ENSBTAP00000052147.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B9Y2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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