Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
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- GO: Anatomical entity
Phenotypes
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ID History
- Gene history

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Gene: TAF1C ENSBTAG00000018772

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Description

TATA-box binding protein associated factor, RNA polymerase I subunit C [Source:VGNC Symbol;Acc:VGNC:35571]

Location

Primary_assembly 18: 10,469,779-10,481,875 reverse strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 3 transcripts (splice variants) and 184 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000115075.1	TAF1C-203	3976	1043aa	ENSBTAP00000076144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RTB5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000111630.1	TAF1C-201	3754	1012aa	ENSBTAP00000103937.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U042	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000056158.4	TAF1C-202	3748	1010aa	ENSBTAP00000051454.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MUD5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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