Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PCLAF ENSBTAG00000039462

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Description

PCNA clamp associated factor [Source:NCBI gene (formerly Entrezgene);Acc:540737]

Gene Synonyms

PAF, PAF15

Location

Primary_assembly 10: 45,645,628-45,653,956 forward strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 5 transcripts (splice variants) and 196 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000101209.2	PCLAF-201	1513	120aa	ENSBTAP00000098013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TI94	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000054209.5	PCLAF-204	1473	117aa	ENSBTAP00000051194.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6ZK76	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000123628.1	PCLAF-205	1231	84aa	ENSBTAP00000084579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SNX6	-
ENSBTAT00000124606.2	PCLAF-202	494	114aa	ENSBTAP00000083502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SLH4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000106164.2	PCLAF-203	347	66aa	ENSBTAP00000101379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TVD8	-

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Summary

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