Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
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- GO: Anatomical entity
Phenotypes
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Gene: TRAF3IP1 ENSBTAG00000015973

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Description

TRAF3 interacting protein 1 [Source:VGNC Symbol;Acc:VGNC:36273]

Location

Primary_assembly 3: 117,639,096-117,698,873 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 5 transcripts (splice variants) and 198 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000048470.6	TRAF3IP1-201	3034	686aa	ENSBTAP00000045498.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B9E6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000117367.2	TRAF3IP1-204	3002	641aa	ENSBTAP00000103911.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TZY6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000092651.2	TRAF3IP1-202	3001	675aa	ENSBTAP00000095656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TFM5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000077069.3	TRAF3IP1-205	2942	621aa	ENSBTAP00000074204.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MIQ3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000111079.2	TRAF3IP1-203	2938	654aa	ENSBTAP00000082425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SIQ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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