Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Phenotypes
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ID History
- Gene history

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Gene: C5H12orf50 ENSBTAG00000018180

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Description

chromosome 5 C12orf50 homolog [Source:VGNC Symbol;Acc:VGNC:55852]

Location

Primary_assembly 5: 17,793,281-17,823,407 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 4 transcripts (splice variants) and 189 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000104498.1	C5H12orf50-203	1748	484aa	ENSBTAP00000096510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TCX3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000118999.1	C5H12orf50-201	1832	461aa	ENSBTAP00000094125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T840	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000089973.1	C5H12orf50-202	1763	438aa	ENSBTAP00000077662.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RYH6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000047880.4	C5H12orf50-204	1466	375aa	ENSBTAP00000045043.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B7J9	-

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Summary

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