Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
Regulation
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ID History
- Gene history

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Gene: SPP1 ENSBTAG00000005260

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Description

secreted phosphoprotein 1 [Source:VGNC Symbol;Acc:VGNC:35232]

Location

Primary_assembly 6: 36,693,206-36,700,390 reverse strand.

ARS-UCD2.0:CM008173.2

About this gene

This gene has 3 transcripts (splice variants) and 119 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000047589.4	SPP1-201	1472	311aa	ENSBTAP00000044782.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MI46	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000006929.4	SPP1-202	1383	201aa	ENSBTAP00000006929.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q58DM6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000081763.2	SPP1-203	652	183aa	ENSBTAP00000062863.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LZU0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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