Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC12A1 ENSBTAG00000010145

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Description

solute carrier family 12 member 1 [Source:VGNC Symbol;Acc:VGNC:34664]

Location

Primary_assembly 10: 62,095,603-62,182,460 reverse strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 5 transcripts (splice variants), 213 orthologues, 8 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000096020.1	SLC12A1-201	3300	1099aa	ENSBTAP00000075494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RWL3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000132561.1	SLC12A1-202	3300	1099aa	ENSBTAP00000098075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TLI8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000046583.5	SLC12A1-203	3300	1099aa	ENSBTAP00000043868.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MS75	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000109899.1	SLC12A1-204	3227	991aa	ENSBTAP00000089384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SSN0	-
ENSBTAT00000124027.1	SLC12A1-205	900	218aa	ENSBTAP00000091675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T1R6	-

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Summary

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