Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
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Gene: NUP43 ENSBTAG00000010196

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Description

nucleoporin 43 [Source:VGNC Symbol;Acc:VGNC:32361]

Location

Primary_assembly 9: 86,902,280-86,917,838 reverse strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 3 transcripts (splice variants) and 213 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000103497.1	NUP43-203	3317	422aa	ENSBTAP00000081795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S719	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000045398.4	NUP43-201	3272	405aa	ENSBTAP00000042789.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DLS4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000107799.1	NUP43-202	2909	284aa	ENSBTAP00000092566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T446	-

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Summary

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