Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NLGN1 ENSBTAG00000031891

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Description

neuroligin 1 [Source:VGNC Symbol;Acc:VGNC:58395]

Location

Primary_assembly 1: 93,146,988-93,897,316 reverse strand.

ARS-UCD2.0:CM008168.2

About this gene

This gene has 3 transcripts (splice variants), 266 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000123967.1	NLGN1-201	2963	863aa	ENSBTAP00000082476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SFT4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000102161.1	NLGN1-202	2903	843aa	ENSBTAP00000085885.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SPF8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000045228.5	NLGN1-203	2843	823aa	ENSBTAP00000042636.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6Q4B1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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