Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
- Gene history

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Gene: PYM1 ENSBTAG00000031146

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Description

PYM homolog 1, exon junction complex associated factor [Source:VGNC Symbol;Acc:VGNC:33592]

Location

Primary_assembly 5: 57,393,912-57,399,532 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 3 transcripts (splice variants) and 195 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000094555.2	PYM1-201	1236	215aa	ENSBTAP00000077703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RYL9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000091863.2	PYM1-202	1254	197aa	ENSBTAP00000086351.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SM41	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000044075.6	PYM1-203	1046	194aa	ENSBTAP00000041588.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6ZES5	-

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Summary

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