Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRAF1 ENSBTAG00000003012

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Description

TNF receptor associated factor 1 [Source:VGNC Symbol;Acc:VGNC:36270]

Location

Primary_assembly 8: 110,293,213-110,317,276 reverse strand.

ARS-UCD2.0:CM008175.2

About this gene

This gene has 4 transcripts (splice variants), 145 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000067833.2	TRAF1-203	2414	432aa	ENSBTAP00000062226.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LXJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000120190.1	TRAF1-201	2516	411aa	ENSBTAP00000097499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TG09	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000043659.5	TRAF1-202	2483	400aa	ENSBTAP00000041215.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BMI8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000067280.2	TRAF1-204	2465	380aa	ENSBTAP00000061380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LN53	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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