Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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Gene: CFAP54 ENSBTAG00000015792

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Description

cilia and flagella associated protein 54 [Source:UniProtKB Gene Name;Acc:E1BPJ0]

Location

Primary_assembly 5: 60,753,133-61,065,106 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 2 transcripts (splice variants) and 99 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000084619.3	CFAP54-201	9615	3169aa	ENSBTAP00000066048.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N6F8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000043356.4	CFAP54-202	9419	3104aa	ENSBTAP00000040931.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BPJ0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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