Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
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ID History
- Gene history

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Gene: CCDC196 ENSBTAG00000014234

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Description

coiled-coil domain containing 196 [Source:VGNC Symbol;Acc:VGNC:55107]

Location

Primary_assembly 10: 78,535,568-78,561,254 forward strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 3 transcripts (splice variants) and 91 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000043345.3	CCDC196-203	1171	296aa	ENSBTAP00000040920.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DJ89	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000108701.1	CCDC196-202	1883	279aa	ENSBTAP00000087864.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SR90	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000127596.2	CCDC196-201	1074	269aa	ENSBTAP00000088381.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SPZ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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