Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ITGB4 ENSBTAG00000018169

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Description

integrin subunit beta 4 [Source:VGNC Symbol;Acc:VGNC:30329]

Location

Primary_assembly 19: 55,840,152-55,872,504 reverse strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 3 transcripts (splice variants), 198 orthologues, 8 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000042566.5	ITGB4-201	5944	1814aa	ENSBTAP00000040201.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B864	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000075471.2	ITGB4-202	5923	1807aa	ENSBTAP00000074469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MRM3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000079531.2	ITGB4-203	5914	1804aa	ENSBTAP00000065111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M9I5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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