Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
- Gene history

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Gene: SYNC ENSBTAG00000026684

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Description

syncoilin, intermediate filament protein [Source:VGNC Symbol;Acc:VGNC:35517]

Location

Primary_assembly 2: 120,951,772-120,970,263 forward strand.

ARS-UCD2.0:CM008169.2

About this gene

This gene has 2 transcripts (splice variants) and 226 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000038058.5	SYNC-202	3336	479aa	ENSBTAP00000037876.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E4L9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000077837.2	SYNC-201	2530	474aa	ENSBTAP00000060259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LKS8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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