Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SDC3 ENSBTAG00000026676

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Description

syndecan 3 [Source:VGNC Symbol;Acc:VGNC:34380]

Location

Primary_assembly 2: 122,666,550-122,705,706 forward strand.

ARS-UCD2.0:CM008169.2

About this gene

This gene has 4 transcripts (splice variants), 192 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000107291.2	SDC3-201	5788	603aa	ENSBTAP00000086504.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SMH7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000118560.2	SDC3-203	5452	456aa	ENSBTAP00000103174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TXW0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000098607.2	SDC3-202	5326	414aa	ENSBTAP00000100772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TUI4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000038035.7	SDC3-204	5115	402aa	ENSBTAP00000037854.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MP76	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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