Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CCR6 ENSBTAG00000014496

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Description

C-C motif chemokine receptor 6 [Source:VGNC Symbol;Acc:VGNC:26986]

Location

Primary_assembly 9: 101,919,075-101,927,715 forward strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 3 transcripts (splice variants), 301 orthologues and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000134893.2	CCR6-201	3510	436aa	ENSBTAP00000083230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SKS5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000097315.2	CCR6-203	3578	412aa	ENSBTAP00000093127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TAU3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000037034.7	CCR6-202	3565	375aa	ENSBTAP00000036877.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MT56	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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