Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Gene: TMEM40 ENSBTAG00000000161

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Description

transmembrane protein 40 [Source:VGNC Symbol;Acc:VGNC:36084]

Location

Primary_assembly 22: 56,388,082-56,439,416 forward strand.

ARS-UCD2.0:CM008189.2

About this gene

This gene has 4 transcripts (splice variants) and 105 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000066256.4	TMEM40-202	891	234aa	ENSBTAP00000056391.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3X8F9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000036498.6	TMEM40-204	1256	226aa	ENSBTAP00000036355.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BEX2	-
ENSBTAT00000088408.2	TMEM40-203	789	200aa	ENSBTAP00000097431.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TGV0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000092613.2	TMEM40-201	678	154aa	ENSBTAP00000075483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RWK7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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