Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: COL18A1 ENSBTAG00000023907

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Description

collagen type XVIII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:27559]

Location

Primary_assembly 1: 145,202,165-145,296,597 forward strand.

ARS-UCD2.0:CM008168.2

About this gene

This gene has 2 transcripts (splice variants), 177 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000034655.7	COL18A1-202	5500	1761aa	ENSBTAP00000034542.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N6W9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000083892.3	COL18A1-201	4286	1329aa	ENSBTAP00000062335.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N0R2 A8E654	-

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Summary

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