Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS13A ENSBTAG00000017734

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Description

vacuolar protein sorting 13 homolog A [Source:UniProtKB Gene Name;Acc:G3MY78]

Location

Primary_assembly 8: 53,179,167-53,451,544 forward strand.

ARS-UCD2.0:CM008175.2

About this gene

This gene has 3 transcripts (splice variants), 220 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000034195.7	VPS13A-203	11132	3173aa	ENSBTAP00000034095.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MM35	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000064443.4	VPS13A-202	9995	3085aa	ENSBTAP00000054506.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MY78	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000135763.2	VPS13A-201	9989	3068aa	ENSBTAP00000101007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TUF7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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