Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: GPATCH4 ENSBTAG00000000406

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Description

G-patch domain containing 4 [Source:VGNC Symbol;Acc:VGNC:29519]

Location

Primary_assembly 3: 14,232,927-14,240,973 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 4 transcripts (splice variants), 214 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000033914.5	GPATCH4-202	1917	428aa	ENSBTAP00000033817.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6ZBJ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000122332.1	GPATCH4-204	1818	388aa	ENSBTAP00000075312.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RTN8	-
ENSBTAT00000074677.3	GPATCH4-201	1798	379aa	ENSBTAP00000065937.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M6E2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000070800.2	GPATCH4-203	1646	397aa	ENSBTAP00000071694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MJX1	-

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Summary

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