Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL1A2 ENSBTAG00000013472

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Description

collagen type I alpha 2 chain [Source:VGNC Symbol;Acc:VGNC:27561]

Location

Primary_assembly 4: 11,775,057-11,813,516 forward strand.

ARS-UCD2.0:CM008171.2

About this gene

This gene has 3 transcripts (splice variants), 202 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000072710.3	COL1A2-203	4923	1366aa	ENSBTAP00000068079.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NA44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000033863.7	COL1A2-202	5116	1364aa	ENSBTAP00000033771.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P02465	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000072738.3	COL1A2-201	4605	1364aa	ENSBTAP00000063114.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LZN8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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