Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTCH2 ENSBTAG00000024137

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Description

patched 2 [Source:VGNC Symbol;Acc:VGNC:33492]

Location

Primary_assembly 3: 101,179,066-101,197,070 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000131116.2	PTCH2-203	4424	1212aa	ENSBTAP00000103407.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TYH8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000136453.1	PTCH2-205	4715	1176aa	ENSBTAP00000107304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000033308.7	PTCH2-201	4245	1150aa	ENSBTAP00000033224.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B778	-
ENSBTAT00000114249.2	PTCH2-202	4231	1130aa	ENSBTAP00000099637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TSZ9	-
ENSBTAT00000125689.2	PTCH2-204	3683	1146aa	ENSBTAP00000077740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RYP6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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