Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC5A9 ENSBTAG00000014225

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Description

solute carrier family 5 member 9 [Source:VGNC Symbol;Acc:VGNC:34912]

Location

Primary_assembly 3: 97,964,107-98,001,297 reverse strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 4 transcripts (splice variants), 215 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000081643.2	SLC5A9-204	2625	705aa	ENSBTAP00000063396.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M130	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000033291.6	SLC5A9-202	3320	703aa	ENSBTAP00000033208.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B749	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000077358.2	SLC5A9-203	3245	678aa	ENSBTAP00000073509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MTA8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000068175.2	SLC5A9-201	2133	627aa	ENSBTAP00000065740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LYB1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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