Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LIN54 ENSBTAG00000010546

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Description

lin-54 DREAM MuvB core complex component [Source:VGNC Symbol;Acc:VGNC:30894]

Location

Primary_assembly 6: 97,752,954-97,815,149 reverse strand.

ARS-UCD2.0:CM008173.2

About this gene

This gene has 5 transcripts (splice variants), 207 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000080730.2	LIN54-204	2545	764aa	ENSBTAP00000071910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MQB3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000083952.2	LIN54-202	2622	748aa	ENSBTAP00000061303.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LVV1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000070639.2	LIN54-203	2573	714aa	ENSBTAP00000068896.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NC12	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000030399.5	LIN54-201	2031	659aa	ENSBTAP00000030381.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BIW9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000075848.2	LIN54-205	1964	544aa	ENSBTAP00000066943.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M8Y6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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