Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SYTL2 ENSBTAG00000000460

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Description

synaptotagmin like 2 [Source:NCBI gene (formerly Entrezgene);Acc:614406]

Location

Primary_assembly 29: 9,741,771-9,862,427 forward strand.

ARS-UCD2.0:CM008196.2

About this gene

This gene has 5 transcripts (splice variants), 198 orthologues and 31 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000092588.2	SYTL2-202	6634	1736aa	ENSBTAP00000080818.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SA75	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000116694.2	SYTL2-204	6572	1720aa	ENSBTAP00000086931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SUT7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000030378.6	SYTL2-201	4186	920aa	ENSBTAP00000030362.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MY23	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000124412.1	SYTL2-203	4135	903aa	ENSBTAP00000082676.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SJB3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000119765.2	SYTL2-205	2292	365aa	ENSBTAP00000090265.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T1I8	-

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Summary

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