Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PPFIA1 ENSBTAG00000022188

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Description

PTPRF interacting protein alpha 1 [Source:VGNC Symbol;Acc:VGNC:56275]

Location

Primary_assembly 29: 47,422,542-47,498,018 forward strand.

ARS-UCD2.0:CM008196.2

About this gene

This gene has 6 transcripts (splice variants), 207 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000031388.7	PPFIA1-201	5066	1227aa	ENSBTAP00000031343.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MD37	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000029943.7	PPFIA1-202	5054	1223aa	ENSBTAP00000029933.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BBK8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000097397.2	PPFIA1-206	4980	1155aa	ENSBTAP00000093813.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T7B7	-
ENSBTAT00000094781.2	PPFIA1-205	4809	1152aa	ENSBTAP00000101679.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TSU1	-
ENSBTAT00000073078.3	PPFIA1-203	4739	1118aa	ENSBTAP00000071440.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MBH3	-
ENSBTAT00000070096.3	PPFIA1-204	4724	1113aa	ENSBTAP00000062676.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N164	-

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Summary

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