Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: UPF1 ENSBTAG00000020922

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Description

UPF1 RNA helicase and ATPase [Source:VGNC Symbol;Acc:VGNC:36680]

Location

Primary_assembly 7: 4,337,611-4,368,677 reverse strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 2 transcripts (splice variants), 216 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000088279.1	UPF1-201	3652	1149aa	ENSBTAP00000089925.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T089	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000027868.7	UPF1-202	3586	1127aa	ENSBTAP00000027868.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BEK9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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