Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
- Paralogues
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ID History
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Gene: CHAMP1 ENSBTAG00000020861

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Description

chromosome alignment maintaining phosphoprotein 1 [Source:VGNC Symbol;Acc:VGNC:27268]

Location

Primary_assembly 12: 87,087,267-87,097,988 forward strand.

ARS-UCD2.0:CM008179.2

About this gene

This gene has 3 transcripts (splice variants) and 109 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000120258.1	CHAMP1-203	3900	900aa	ENSBTAP00000094607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T9D3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000134433.1	CHAMP1-201	5969	804aa	ENSBTAP00000081926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SEB0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000027794.6	CHAMP1-202	3786	862aa	ENSBTAP00000027794.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MFQ9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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