Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CIITA ENSBTAG00000020649

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Description

class II major histocompatibility complex transactivator [Source:VGNC Symbol;Acc:VGNC:27366]

Location

Primary_assembly 25: 9,542,266-9,601,546 forward strand.

ARS-UCD2.0:CM008192.2

About this gene

This gene has 4 transcripts (splice variants), 141 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000027518.8	CIITA-201	4560	1206aa	ENSBTAP00000027518.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MG35	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000079995.3	CIITA-203	4446	1168aa	ENSBTAP00000069037.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M5S3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000075660.3	CIITA-202	4389	1129aa	ENSBTAP00000059202.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LQ73	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000071246.3	CIITA-204	3909	1028aa	ENSBTAP00000066442.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LZW6	-

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Summary

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