Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: AP1S2 ENSBTAG00000020420

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Description

adaptor related protein complex 1 subunit sigma 2 [Source:VGNC Symbol;Acc:VGNC:50199]

Location

Primary_assembly X: 127,668,045-127,695,266 forward strand.

ARS-UCD2.0:CM008197.2

About this gene

This gene has 6 transcripts (splice variants), 285 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000027212.7	AP1S2-201	673	160aa	ENSBTAP00000027212.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3ZBS3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000148302.1	AP1S2-206	1982	157aa	ENSBTAP00000105973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000112390.2	AP1S2-204	1857	153aa	ENSBTAP00000096997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TIN4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000089448.2	AP1S2-205	1802	156aa	ENSBTAP00000086435.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9STM1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000068520.3	AP1S2-203	487	145aa	ENSBTAP00000071566.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MBU7	-
ENSBTAT00000081704.2	AP1S2-202	471	156aa	ENSBTAP00000071846.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MLF5	-

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Summary

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