Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX11 ENSBTAG00000020321

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Description

sorting nexin 11 [Source:VGNC Symbol;Acc:VGNC:35092]

Location

Primary_assembly 19: 38,358,273-38,385,093 reverse strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 5 transcripts (splice variants), 206 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000133931.1	SNX11-203	1843	290aa	ENSBTAP00000097500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TGZ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000027082.6	SNX11-205	2328	269aa	ENSBTAP00000027082.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6Z859	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000100206.1	SNX11-201	1369	280aa	ENSBTAP00000078688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S135	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000123581.1	SNX11-202	968	246aa	ENSBTAP00000087488.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9STM4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000127911.1	SNX11-204	896	244aa	ENSBTAP00000103907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TZ33	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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