Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: COL12A1 ENSBTAG00000020056

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Description

collagen type XII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:52756]

Location

Primary_assembly 9: 14,661,265-14,779,709 reverse strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 3 transcripts (splice variants), 297 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000026725.7	COL12A1-201	11574	3065aa	ENSBTAP00000026725.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N401	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000128312.1	COL12A1-202	11346	2989aa	ENSBTAP00000092547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T7G8	-
ENSBTAT00000110709.1	COL12A1-203	8250	1901aa	ENSBTAP00000089321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SVH3	-

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Summary

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