Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
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Phenotypes
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ID History
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Gene: C11H9orf50 ENSBTAG00000019513

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Description

chromosome 11 C9orf50 homolog [Source:VGNC Symbol;Acc:VGNC:52622]

Location

Primary_assembly 11: 100,005,138-100,017,593 reverse strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 3 transcripts (splice variants) and 53 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000106510.1	C11H9orf50-201	1541	447aa	ENSBTAP00000077029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RX17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000025995.6	C11H9orf50-203	1820	426aa	ENSBTAP00000025995.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B7S2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000099424.1	C11H9orf50-202	1660	442aa	ENSBTAP00000096413.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TCL6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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