Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRDM10 ENSBTAG00000019001

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Description

PR/SET domain 10 [Source:VGNC Symbol;Acc:VGNC:33289]

Location

Primary_assembly 29: 36,102,717-36,199,728 reverse strand.

ARS-UCD2.0:CM008196.2

About this gene

This gene has 3 transcripts (splice variants), 196 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000084970.2	PRDM10-202	4665	1154aa	ENSBTAP00000071140.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MJX8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000025295.7	PRDM10-203	4653	1150aa	ENSBTAP00000025295.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BE45	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000087505.2	PRDM10-201	4512	1103aa	ENSBTAP00000069409.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MEH1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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