Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
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Gene: C18H19orf47 ENSBTAG00000018859

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Description

chromosome 18 C19orf47 homolog [Source:VGNC Symbol;Acc:VGNC:49179]

Location

Primary_assembly 18: 49,689,373-49,704,734 reverse strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 2 transcripts (splice variants) and 191 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000091508.1	C18H19orf47-202	1407	386aa	ENSBTAP00000092905.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T506	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000025109.5	C18H19orf47-201	1371	370aa	ENSBTAP00000025109.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MTX1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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