Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LDB3 ENSBTAG00000018707

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Description

LIM domain binding 3 [Source:VGNC Symbol;Acc:VGNC:30823]

Location

Primary_assembly 28: 41,323,654-41,384,905 forward strand.

ARS-UCD2.0:CM008195.2

About this gene

This gene has 5 transcripts (splice variants), 220 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000110063.2	LDB3-202	5060	730aa	ENSBTAP00000086710.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SK76	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000065403.4	LDB3-204	4947	723aa	ENSBTAP00000056431.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N3C9	-
ENSBTAT00000083205.3	LDB3-205	4811	676aa	ENSBTAP00000063798.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M1H0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000024904.7	LDB3-201	2058	398aa	ENSBTAP00000024904.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DLW5	-
ENSBTAT00000127949.2	LDB3-203	1416	215aa	ENSBTAP00000098324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TIN5	-

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Summary

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